Uses of Interface
jebl.evolution.substmodel.RateMatrix
Packages that use RateMatrix
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Uses of RateMatrix in jebl.evolution.align.scores
Constructors in jebl.evolution.align.scores with parameters of type RateMatrix -
Uses of RateMatrix in jebl.evolution.substmodel
Classes in jebl.evolution.substmodel that implement RateMatrixModifier and TypeClassDescriptionclass
abstract base class for all rate matricesclass
base class of rate matrices for amino acidsclass
WAG model of amino acid evolution (S.Methods in jebl.evolution.substmodel with parameters of type RateMatrixModifier and TypeMethodDescriptionvoid
MatrixExponential.setMatrix
(RateMatrix r) update rate matrix used in present moduleConstructors in jebl.evolution.substmodel with parameters of type RateMatrix