Package jebl.evolution.align
Class SequenceShuffler
java.lang.Object
jebl.evolution.align.SequenceShuffler
Shuffles a sequence and aligns it again multiple times to give mean and variance of
alignments on random sequences.
- Version:
- $Id: SequenceShuffler.java 185 2006-01-23 23:03:18Z rambaut $
- Author:
- Richard Moir, Alexei Drummond
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionfloat
getMax()
float
getMean()
float
getMin()
double
getStdev()
void
setProgressMonitor
(ProgressMonitor monitor) void
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Constructor Details
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SequenceShuffler
public SequenceShuffler()
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Method Details
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shuffle
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getMean
public float getMean()- Returns:
- the mean score of the shuffled alignments.
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getMax
public float getMax() -
getMin
public float getMin() -
getStdev
public double getStdev()- Returns:
- the standard deviation of scores for the shuffled alignments.
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setProgressMonitor
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