Represents a sequential genomic region. More...

#include <BamAux.h>

Public Member Functions
	BamRegion (const int &leftID=-1, const int &leftPos=-1, const int &rightID=-1, const int &rightPos=-1)
	constructor More...

	BamRegion (const BamRegion &other)
	copy constructor More...

void	clear (void)
	Clears region boundaries. More...

bool	isLeftBoundSpecified (void) const
	Returns true if region has a left boundary. More...

bool	isNull (void) const
	Returns true if region boundaries are not defined. More...

bool	isRightBoundSpecified (void) const
	Returns true if region has a right boundary. More...

Public Attributes
int	LeftRefID
	reference ID for region's left boundary More...

int	LeftPosition
	position for region's left boundary More...

int	RightRefID
	reference ID for region's right boundary More...

int	RightPosition
	position for region's right boundary More...

Detailed Description

Represents a sequential genomic region.

Allowed to span multiple (sequential) references.

Warning: BamRegion now represents a zero-based, HALF-OPEN interval. In previous versions of BamTools (0.x & 1.x) all intervals were treated as zero-based, CLOSED.

Constructor & Destructor Documentation

BamTools::BamRegion::BamRegion	(	const int &	leftID = `-1`,
		const int &	leftPos = `-1`,
		const int &	rightID = `-1`,
		const int &	rightPos = `-1`
	)

inline

constructor

BamTools::BamRegion::BamRegion ( const BamRegion & other )

inline

copy constructor

void BamTools::BamRegion::clear ( void )

inline

Clears region boundaries.

bool BamTools::BamRegion::isLeftBoundSpecified ( void ) const

inline

Returns true if region has a left boundary.

bool BamTools::BamRegion::isNull ( void ) const

inline

Returns true if region boundaries are not defined.

bool BamTools::BamRegion::isRightBoundSpecified ( void ) const

inline

Returns true if region has a right boundary.

int BamTools::BamRegion::LeftPosition

position for region's left boundary

int BamTools::BamRegion::LeftRefID

reference ID for region's left boundary

int BamTools::BamRegion::RightPosition

position for region's right boundary

int BamTools::BamRegion::RightRefID

reference ID for region's right boundary

The documentation for this struct was generated from the following file: