Class Specialization
Dna5
Alphabet for DNA including 'N' character.
Include Headers
seqan/basic.h
Remarks
The ValueSize of Dna5 is 5.
The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'T' = 3 .
The 'N' character ("unkown nucleotide") is encoded by 4.
Objects of type Dna5 can be converted to various other types and vice versa.
An object that has a value not in {'A', 'C', 'G', 'T'} is converted to 'N' .
Specialization of
Implements
Metafunctions
| Tests type to be simple. (SimpleType) | |
| The spec of a class. (SimpleType) | |
| Type of the items in the container or behind an iterator. (SimpleType) |
Functions
| Assigns one object to another object. (SimpleType) | |
| Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType) |
Example Programs
See Also
SeqAn - Sequence Analysis Library - www.seqan.de